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Hendrix, D., M. Levine, and W. Shi, "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data", Genome Biology, vol. 11, issue 4, pp. R39, 04/2010.
Shi, W., D. Hendrix, M. Levine, and B. Haley, "A distinct class of small RNAs arises from pre-miRNA–proximal regions in a simple chordate", Nature Structural & Molecular Biology, vol. 16, issue 2, pp. 183 - 189, 02/2009.
Hong, J. - W., D. Hendrix, D. Papatsenko, and M. S. Levine, "How the Dorsal gradient works: insights from postgenome technologies.", Proceedings of the National Academy of Sciences of the United States of America, vol. 105, issue 51, pp. 20072-6, 12/2008.
Hong, J. - W., D. Hendrix, and M. S. Levine, "Shadow Enhancers as a Source of Evolutionary Novelty", Science, vol. 321, issue 5894, pp. 1314 - 1314, 09/2008.
Haley, B., D. Hendrix, V. Trang, and M. Levine, "A simplified miRNA-based gene silencing method for Drosophila melanogaster", Developmental Biology, vol. 321, issue 2, pp. 482 - 490, 09/2008.
Mahony, S., D. Hendrix, T. J. Smith, and A. Golden, "Self-Organizing Maps of Position Weight Matrices for Motif Discovery in Biological Sequences", Artificial Intelligence Review, vol. 24, issue 3-4, pp. 397 - 413, 11/2005.